CDYL2 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CDYL2

Chromodomain Y like 2. (511 aa)

Predicted Functional Partners:

LOC100698399

0.914

LOC100711328

0.914

hsdl2

0.884

LOC100709616

0.879

LOC100711605

0.874

LOC102082914

0.795

LOC100702543

0.762

I3JW57_ORENI

0.748

acox1

0.744

hadhb

0.731

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDYL2	I3JW57_ORENI	ENSONIP00000007046	ENSONIP00000013102	Chromodomain Y like 2.	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.	0.748
CDYL2	LOC100698399	ENSONIP00000007046	ENSONIP00000031484	Chromodomain Y like 2.	Non-specific lipid-transfer protein.	0.914
CDYL2	LOC100702543	ENSONIP00000007046	ENSONIP00000010991	Chromodomain Y like 2.	Cytochrome b reductase 1.	0.762
CDYL2	LOC100709616	ENSONIP00000007046	ENSONIP00000033387	Chromodomain Y like 2.	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial.	0.879
CDYL2	LOC100711328	ENSONIP00000007046	ENSONIP00000079985	Chromodomain Y like 2.	Sterol carrier protein 2a; Belongs to the thiolase-like superfamily. Thiolase family.	0.914
CDYL2	LOC100711605	ENSONIP00000007046	ENSONIP00000081283	Chromodomain Y like 2.	Malate synthase-like.	0.874
CDYL2	LOC102082914	ENSONIP00000007046	ENSONIP00000063959	Chromodomain Y like 2.	Mesoderm induction early response 1, family member 2.	0.795
CDYL2	acox1	ENSONIP00000007046	ENSONIP00000034373	Chromodomain Y like 2.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.744
CDYL2	hadhb	ENSONIP00000007046	ENSONIP00000052738	Chromodomain Y like 2.	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta; Belongs to the thiolase-like superfamily. Thiolase family.	0.731
CDYL2	hsdl2	ENSONIP00000007046	ENSONIP00000064215	Chromodomain Y like 2.	Hydroxysteroid dehydrogenase like 2.	0.884
I3JW57_ORENI	CDYL2	ENSONIP00000013102	ENSONIP00000007046	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.	Chromodomain Y like 2.	0.748
LOC100698399	CDYL2	ENSONIP00000031484	ENSONIP00000007046	Non-specific lipid-transfer protein.	Chromodomain Y like 2.	0.914
LOC100698399	LOC100709616	ENSONIP00000031484	ENSONIP00000033387	Non-specific lipid-transfer protein.	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial.	0.827
LOC100698399	LOC100711328	ENSONIP00000031484	ENSONIP00000079985	Non-specific lipid-transfer protein.	Sterol carrier protein 2a; Belongs to the thiolase-like superfamily. Thiolase family.	0.956
LOC100698399	LOC100711605	ENSONIP00000031484	ENSONIP00000081283	Non-specific lipid-transfer protein.	Malate synthase-like.	0.980
LOC100698399	acox1	ENSONIP00000031484	ENSONIP00000034373	Non-specific lipid-transfer protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.997
LOC100698399	hadhb	ENSONIP00000031484	ENSONIP00000052738	Non-specific lipid-transfer protein.	Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta; Belongs to the thiolase-like superfamily. Thiolase family.	0.969
LOC100698399	hsdl2	ENSONIP00000031484	ENSONIP00000064215	Non-specific lipid-transfer protein.	Hydroxysteroid dehydrogenase like 2.	0.792
LOC100702543	CDYL2	ENSONIP00000010991	ENSONIP00000007046	Cytochrome b reductase 1.	Chromodomain Y like 2.	0.762
LOC100702543	LOC102082914	ENSONIP00000010991	ENSONIP00000063959	Cytochrome b reductase 1.	Mesoderm induction early response 1, family member 2.	0.904