Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
foxf1Forkhead box F1. (379 aa)    
Predicted Functional Partners:
gata6
GATA binding protein 6.
   
 0.600
SPATA5
Spermatogenesis associated 5.
    
 
 0.598
bmp4
Bone morphogenetic protein 4.
     
 0.597
ddx11
DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11.
    
 
 0.573
LOC100702637
Homeobox B6b.
   
 0.565
LOC100697602
Homeobox domain-containing protein.
   
 0.565
gata4
GATA binding protein 4.
   
 0.524
bmp2
Bone morphogenetic protein 2b.
     
 0.520
ipo5
Karyopherin (importin) beta 3.
    
  0.520
kpnb1
Karyopherin (importin) beta 1.
    
  0.504
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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