STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100702885AAA domain-containing protein. (774 aa)    
Predicted Functional Partners:
phb
Prohibitin.
   
 0.889
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
 
 0.834
LOC100690566
Prohibitin.
   
 0.795
PHB2
Prohibitin.
   
 0.795
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
0.773
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.770
mrpl13
39S ribosomal protein L13, mitochondrial.
  
 
 0.740
mrpl19
Mitochondrial ribosomal protein L19.
  
 
 0.739
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.737
mrps14
Mitochondrial ribosomal protein S14.
   
 
 0.733
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.