STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100690854CLN6 transmembrane ER protein a. (309 aa)    
Predicted Functional Partners:
cln5
CLN5 intracellular trafficking protein.
  
   
 0.680
cln8
CLN8 transmembrane ER and ERGIC protein.
      
 0.567
LOC100689844
Battenin.
      
 0.544
ppt1
Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).
      
 0.537
calml4
Calmodulin-like 4a.
 
   
  0.533
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.518
Mfsd8
Major facilitator superfamily domain containing 8.
      
 0.491
tpp1
Tripeptidyl peptidase I.
     
 0.467
itgb1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.446
ENSONIP00000034338
Integrin beta 2.
   
 0.446
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.