Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100691655Zinc finger protein 609b. (1379 aa)    
Predicted Functional Partners:
Srek1
Splicing regulatory glutamine/lysine-rich protein 1.
      
 0.679
zbtb40
Zinc finger and BTB domain containing 40.
   
  
 0.545
tubgcp4
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.523
LOC100703680
PIGY upstream reading frame.
      
 0.523
Srfbp1
Uncharacterized protein.
      
 0.522
bean1
Protein BEAN1 isoform X1.
      
 0.522
map2k5
Mitogen-activated protein kinase kinase 5; Belongs to the protein kinase superfamily.
      
 0.473
rere
Arginine-glutamic acid dipeptide (RE) repeats a.
   
 
 0.468
I3KAI9_ORENI
Arginine-glutamic acid dipeptide (RE) repeats b.
   
 
 0.468
Atn1
LOW QUALITY PROTEIN: atrophin-1.
   
 
 0.468
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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