Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cmtr2Cap methyltransferase 2. (770 aa)    
Predicted Functional Partners:
Snrpf
Small nuclear ribonucleoprotein F.
    
   0.920
psme3ip1
Family with sequence similarity 192 member A.
      
 0.915
snrpb
Small nuclear ribonucleoprotein-associated protein.
    
   0.913
snrpe
Small nuclear ribonucleoprotein E.
    
   0.909
cog4
Component of oligomeric golgi complex 4.
      
 0.786
snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
    
   0.762
Snrpg
Small nuclear ribonucleoprotein G.
    
   0.757
rnmt
mRNA cap guanine-N7 methyltransferase.
      
 0.755
cpne2
Copine II.
      
 0.736
Exosc6
Exosome component 6.
      
 0.733
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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