STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cntn5Contactin 5. (1105 aa)    
Predicted Functional Partners:
ANKRD34A
Ankyrin repeat domain 34A.
   
 0.614
I3KXW1_ORENI
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.599
LOC100694220
Fibromodulin a.
    
 
 0.592
LOC100705237
Carbonic anhydrase XVI b.
    
 0.590
APP
Amyloid beta precursor protein.
   
 
 0.571
LOC100709268
Amyloid beta (A4) precursor protein b.
   
 
 0.571
I3KXH4_ORENI
HTH_Tnp_Tc3_2 domain-containing protein.
    
 0.541
nfasc
Neurofascin homolog (chicken) a.
    
0.540
LOC100712012
Uncharacterized protein.
    
0.540
LOC100699181
Uncharacterized protein.
    
0.540
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.