STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100707620Serine and arginine rich splicing factor 5b. (293 aa)    
Predicted Functional Partners:
nxf1
Zgc:153681.
   
 0.970
LOC100692146
SRSF protein kinase 1b.
    
 0.827
srpk1
SRSF protein kinase 1a.
    
 0.827
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.802
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 0.773
LOC100706148
FIP1 like 1b (S. cerevisiae).
   
 0.764
snrpe
Small nuclear ribonucleoprotein E.
   
 0.763
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.762
sympk
Symplekin.
   
 0.760
LOC100709252
RRM domain-containing protein.
  
 0.758
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.