STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100690724Uncharacterized protein. (420 aa)    
Predicted Functional Partners:
LOC100711208
Proliferation-associated 2G4, b.
    
   0.506
pa2g4
Proliferation-associated 2G4, a.
    
   0.506
rpl9
Ribosomal protein L9.
    
 0.487
med1
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.487
ncor2
Nuclear receptor corepressor 2.
    
 0.439
ncor1
Nuclear receptor corepressor 1.
    
 0.439
I3KES1_ORENI
Uncharacterized protein.
    
 0.439
I3JAR8_ORENI
Uncharacterized protein.
    
 0.439
srebf2
Sterol regulatory element binding transcription factor 2.
    
 
 0.403
pprc1
PPARG related coactivator 1.
    
 
 0.403
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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