I3JF70_ORENI protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

I3JF70_ORENI

GLI pathogenesis-related 2, like; Belongs to the CRISP family. (148 aa)

Predicted Functional Partners:

gart

0.811

LOC100691569

0.799

LOC100696335

0.621

eif4e

0.608

LOC100695556

0.608

slc46a2

0.574

PLEKHG1

0.523

tbata

0.522

prima1

0.521

nudt2

0.516

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3JF70_ORENI	LOC100691569	ENSONIP00000007511	ENSONIP00000020838	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	Cytochrome b5 reductase 4.	0.799
I3JF70_ORENI	LOC100695556	ENSONIP00000007511	ENSONIP00000080287	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family.	0.608
I3JF70_ORENI	LOC100696335	ENSONIP00000007511	ENSONIP00000068380	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	Transcription factor EB.	0.621
I3JF70_ORENI	PLEKHG1	ENSONIP00000007511	ENSONIP00000046992	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	Pleckstrin homology and RhoGEF domain containing G1.	0.523
I3JF70_ORENI	eif4e	ENSONIP00000007511	ENSONIP00000042244	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	0.608
I3JF70_ORENI	gart	ENSONIP00000007511	ENSONIP00000002346	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.811
I3JF70_ORENI	nudt2	ENSONIP00000007511	ENSONIP00000025685	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	Nudix (nucleoside diphosphate linked moiety X)-type motif 2.	0.516
I3JF70_ORENI	prima1	ENSONIP00000007511	ENSONIP00000042792	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	Proline-rich membrane anchor 1.	0.521
I3JF70_ORENI	slc46a2	ENSONIP00000007511	ENSONIP00000005151	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	Solute carrier family 46 member 2.	0.574
I3JF70_ORENI	tbata	ENSONIP00000007511	ENSONIP00000020310	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	Thymus, brain and testes associated.	0.522
LOC100691569	I3JF70_ORENI	ENSONIP00000020838	ENSONIP00000007511	Cytochrome b5 reductase 4.	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	0.799
LOC100691569	gart	ENSONIP00000020838	ENSONIP00000002346	Cytochrome b5 reductase 4.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.477
LOC100695556	I3JF70_ORENI	ENSONIP00000080287	ENSONIP00000007511	Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family.	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	0.608
LOC100695556	eif4e	ENSONIP00000080287	ENSONIP00000042244	Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	0.909
LOC100696335	I3JF70_ORENI	ENSONIP00000068380	ENSONIP00000007511	Transcription factor EB.	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	0.621
PLEKHG1	I3JF70_ORENI	ENSONIP00000046992	ENSONIP00000007511	Pleckstrin homology and RhoGEF domain containing G1.	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	0.523
PLEKHG1	nudt2	ENSONIP00000046992	ENSONIP00000025685	Pleckstrin homology and RhoGEF domain containing G1.	Nudix (nucleoside diphosphate linked moiety X)-type motif 2.	0.509
eif4e	I3JF70_ORENI	ENSONIP00000042244	ENSONIP00000007511	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	0.608
eif4e	LOC100695556	ENSONIP00000042244	ENSONIP00000080287	Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family.	Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family.	0.909
gart	I3JF70_ORENI	ENSONIP00000002346	ENSONIP00000007511	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	GLI pathogenesis-related 2, like; Belongs to the CRISP family.	0.811