Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CLEC3AC-type lectin domain family 3 member A. (198 aa)    
Predicted Functional Partners:
trip4
Thyroid hormone receptor interactor 4.
    
   0.759
vat1l
Synaptic vesicle membrane protein VAT-1 homolog-like.
 
  
 0.709
ENSONIP00000028675
Microseminoprotein, prostate associated.
      
 0.701
znrf1
Zinc and ring finger 1.
      
 0.694
rnaseh1
Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
    
   0.657
cish
Uncharacterized protein.
      
 0.626
syf2
SYF2 pre-mRNA-splicing factor.
      
 0.600
LOC100707345
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
     
 0.588
psmd7
Proteasome 26S subunit, non-ATPase 7.
      
 0.576
I3KC48_ORENI
Nuclear factor of activated T cells 5a.
      
 0.576
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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