STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Wdr60WD repeat domain 60. (691 aa)    
Predicted Functional Partners:
dync2li1
Dynein, cytoplasmic 2, light intermediate chain 1.
    
 0.985
wdr34
WD repeat domain 34.
    
0.980
tctex1d2
Tctex1 domain containing 2.
    
 0.882
LOC100698873
Dynein light chain.
    
 0.815
LOC100705329
Dynein light chain 2, cytoplasmic.
    
 0.815
DYNLL2
Dynein light chain 2, cytoplasmic.
    
 0.815
ttc21b
Tetratricopeptide repeat domain 21B.
     
 0.804
ENSONIP00000046473
annotation not available
   
 0.801
Dynlrb1
Dynein light chain roadblock-type 1.
   
 0.801
LOC100698024
Robl_LC7 domain-containing protein.
   
 0.801
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.