Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Wdr60WD repeat domain 60. (691 aa)    
Predicted Functional Partners:
wdr34
WD repeat domain 34.
    
0.999
dync2li1
Dynein, cytoplasmic 2, light intermediate chain 1.
    
 0.999
tctex1d2
Tctex1 domain containing 2.
    
 0.993
wdr35
WD repeat-containing protein 35.
   
 
 0.953
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.932
Dynlrb1
Dynein light chain roadblock-type 1.
    
 0.916
LOC100698873
Dynein light chain.
    
 0.913
LOC100705329
Dynein light chain 2, cytoplasmic.
    
 0.913
DYNLL2
Dynein light chain 2, cytoplasmic.
    
 0.913
dynlt1
Dynein, light chain, Tctex-type 1.
    
 0.886
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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