Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sbf2SET binding factor 2. (1910 aa)    
Predicted Functional Partners:
rab21
RAB21, member RAS oncogene family.
    
 0.813
mtmr2
Myotubularin related protein 2.
   
 0.800
LOC100701963
Myotubularin related protein 1a.
   
 0.800
Mtm1
Myotubularin 1.
   
 0.800
LOC100706213
SH3 domain and tetratricopeptide repeats 2.
      
 0.684
mtmr3
Myotubularin related protein 3.
    
 0.650
MTMR4
Myotubularin related protein 4.
    
 0.650
Stxbp6
Syntaxin-binding protein 6 isoform X1.
   
  
 0.618
ENSONIP00000043233
Retinoic acid induced 1.
   
 
 0.604
tcf20
Transcription factor 20 isoform X1.
   
 
 0.604
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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