STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSONIP00000007700Matrilin 3a. (336 aa)    
Predicted Functional Partners:
lum
Lumican.
   
 0.681
MFAP2
Microfibril associated protein 2.
   
 0.511
ENSONIP00000066554
annotation not available
   
 0.508
LOC100707106
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 0.465
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.457
LOC100694653
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.441
ENSONIP00000038349
RING finger protein 223.
   
 0.436
I3JV04_ORENI
Translocase of outer mitochondrial membrane 20.
    
 0.433
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.433
LOC106098755
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.427
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.