STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100710999Charged multivesicular body protein 5b. (219 aa)    
Predicted Functional Partners:
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
   
 0.974
LOC100711005
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.974
vps4a
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
   
 0.974
vta1
Vesicle (multivesicular body) trafficking 1.
   
 0.973
chmp2a
Charged multivesicular body protein 2A.
   
 0.955
I3J4H0_ORENI
IST1 factor associated with ESCRT-III.
    
 
 0.923
chmp3
Charged multivesicular body protein 3.
   
 0.913
LOC100709386
Charged multivesicular body protein 5a.
  
  
 
0.900
mlkl
Mixed lineage kinase domain like pseudokinase.
    
  0.900
brox
BRO1 domain and CAAX motif containing.
    
 0.869
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.