STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc25a40Solute carrier family 25 member 40; Belongs to the mitochondrial carrier (TC 2.A.29) family. (344 aa)    
Predicted Functional Partners:
Rundc3b
RUN domain containing 3b.
      
 0.680
acbd7
Carnitine O-octanoyltransferase.
      
 0.566
txnl1
Thioredoxin-like 1.
   
    0.499
I3JUG4_ORENI
Cyclin D binding myb-like transcription factor 1.
      
 0.493
isca1
Iron-sulfur cluster assembly 1 homolog, mitochondrial.
   
  
 0.455
bbox1
Butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1.
     
 0.436
Sod2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
      
 0.429
Abcb7
ATP-binding cassette, sub-family B (MDR/TAP), member 7.
      
 0.428
LOC100534453
ATP-binding cassette, sub-family B (MDR/TAP), member 4.
      
 0.426
tmlhe
Trimethyllysine hydroxylase, epsilon.
     
 0.412
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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