STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cgnCingulin a. (1202 aa)    
Predicted Functional Partners:
ARHGEF2
Rho/rac guanine nucleotide exchange factor (GEF) 2.
     
 0.954
LOC100704015
Rho guanine nucleotide exchange factor (GEF) 1a.
     
 0.954
arhgef18
Rho/rac guanine nucleotide exchange factor (GEF) 18b.
     
 0.951
I3JNS9_ORENI
Tight junction protein 1b; Belongs to the MAGUK family.
   
 
 0.940
LOC100698737
Tight junction protein 1a; Belongs to the MAGUK family.
   
 
 0.940
LOC100710602
Cingulin b.
  
  
 
0.902
gata4
GATA binding protein 4.
     
  0.900
I3JD82_ORENI
F11 receptor, tandem duplicate 1.
   
 
 0.764
LOC100709536
Occludin a.
      
 0.567
I3K4S8_ORENI
Tight junction protein 2a (zona occludens 2); Belongs to the MAGUK family.
   
  
 0.519
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.