LOC100705513 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100705513

Uncharacterized protein. (618 aa)

Predicted Functional Partners:

LYPD6

0.925

p2rx1

0.654

p2rx4

0.642

GRIN3A

0.609

LOC100690173

0.563

LOC100534577

0.563

LOC100711766

0.542

Chrna5

0.516

LOC100708615

0.516

LOC100699752

0.516

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Chrna5	LOC100705513	ENSONIP00000003398	ENSONIP00000007979	Cholinergic receptor, nicotinic, alpha 5.	Uncharacterized protein.	0.516
Chrna5	LYPD6	ENSONIP00000003398	ENSONIP00000015121	Cholinergic receptor, nicotinic, alpha 5.	LY6/PLAUR domain containing 6.	0.924
GRIN3A	LOC100534577	ENSONIP00000005162	ENSONIP00000051975	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.960
GRIN3A	LOC100690173	ENSONIP00000005162	ENSONIP00000033927	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	0.960
GRIN3A	LOC100705513	ENSONIP00000005162	ENSONIP00000007979	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.609
GRIN3A	LOC100711766	ENSONIP00000005162	ENSONIP00000056330	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.898
GRIN3A	p2rx1	ENSONIP00000005162	ENSONIP00000063753	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.909
GRIN3A	p2rx4	ENSONIP00000005162	ENSONIP00000081062	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.909
LOC100534577	GRIN3A	ENSONIP00000051975	ENSONIP00000005162	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.960
LOC100534577	LOC100705513	ENSONIP00000051975	ENSONIP00000007979	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Uncharacterized protein.	0.563
LOC100534577	LOC100711766	ENSONIP00000051975	ENSONIP00000056330	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.820
LOC100534577	p2rx1	ENSONIP00000051975	ENSONIP00000063753	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.830
LOC100534577	p2rx4	ENSONIP00000051975	ENSONIP00000081062	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.851
LOC100690173	GRIN3A	ENSONIP00000033927	ENSONIP00000005162	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.960
LOC100690173	LOC100705513	ENSONIP00000033927	ENSONIP00000007979	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	Uncharacterized protein.	0.563
LOC100690173	LOC100711766	ENSONIP00000033927	ENSONIP00000056330	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.820
LOC100690173	p2rx1	ENSONIP00000033927	ENSONIP00000063753	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.830
LOC100690173	p2rx4	ENSONIP00000033927	ENSONIP00000081062	Glutamate receptor, ionotropic, N-methyl D-aspartate 1b.	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.	0.851
LOC100699752	LOC100705513	ENSONIP00000061610	ENSONIP00000007979	Cholinergic receptor, nicotinic, beta polypeptide 3a.	Uncharacterized protein.	0.516
LOC100699752	LYPD6	ENSONIP00000061610	ENSONIP00000015121	Cholinergic receptor, nicotinic, beta polypeptide 3a.	LY6/PLAUR domain containing 6.	0.924