Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
I3JGM9_ORENISi:ch211-237i5.4. (363 aa)    
Predicted Functional Partners:
I3KZ95_ORENI
Glycoprotein IX (platelet).
   
 0.959
Gp1bb
Platelet glycoprotein Ib beta chain.
   
 0.924
HGFAC
HGF activator.
    
 0.551
I3IZU5_ORENI
Si:ch211-117l17.7.
  
 
0.511
I3JM52_ORENI
Otogelin.
   
 0.504
LOC100704430
Uncharacterized protein.
   
 0.504
LOC100706470
Uncharacterized protein.
   
 0.504
ENSONIP00000042142
LOW QUALITY PROTEIN: mucin-2-like.
   
 0.504
vwf
Von Willebrand factor.
   
 0.504
nup42
Nucleoporin 42.
   
 0.504
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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