ralyl protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ralyl

RRM domain-containing protein. (293 aa)

Predicted Functional Partners:

LOC109194311

0.805

LOC100708824

0.805

I3J012_ORENI

0.737

eif4a3

0.657

hnrnpk

0.653

LOC100706673

0.653

rbmx

0.612

hnrnpu

0.610

HNRNPUL1

0.610

Cirbp

0.567

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cirbp	HNRNPUL1	ENSONIP00000012789	ENSONIP00000005045	Cold inducible RNA binding protein b.	Heterogeneous nuclear ribonucleoprotein U like 1.	0.691
Cirbp	I3J012_ORENI	ENSONIP00000012789	ENSONIP00000002202	Cold inducible RNA binding protein b.	Heterogeneous nuclear ribonucleoprotein M.	0.872
Cirbp	LOC100706673	ENSONIP00000012789	ENSONIP00000047018	Cold inducible RNA binding protein b.	Heterogeneous nuclear ribonucleoprotein K, like.	0.927
Cirbp	LOC100708824	ENSONIP00000012789	ENSONIP00000051052	Cold inducible RNA binding protein b.	RRM domain-containing protein.	0.814
Cirbp	LOC109194311	ENSONIP00000012789	ENSONIP00000023106	Cold inducible RNA binding protein b.	RRM domain-containing protein.	0.814
Cirbp	eif4a3	ENSONIP00000012789	ENSONIP00000048251	Cold inducible RNA binding protein b.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.546
Cirbp	hnrnpk	ENSONIP00000012789	ENSONIP00000018888	Cold inducible RNA binding protein b.	Heterogeneous nuclear ribonucleoprotein K.	0.927
Cirbp	hnrnpu	ENSONIP00000012789	ENSONIP00000001589	Cold inducible RNA binding protein b.	Heterogeneous nuclear ribonucleoprotein Ub.	0.691
Cirbp	ralyl	ENSONIP00000012789	ENSONIP00000008030	Cold inducible RNA binding protein b.	RRM domain-containing protein.	0.567
Cirbp	rbmx	ENSONIP00000012789	ENSONIP00000003386	Cold inducible RNA binding protein b.	RNA binding motif protein X-linked.	0.790
HNRNPUL1	Cirbp	ENSONIP00000005045	ENSONIP00000012789	Heterogeneous nuclear ribonucleoprotein U like 1.	Cold inducible RNA binding protein b.	0.691
HNRNPUL1	I3J012_ORENI	ENSONIP00000005045	ENSONIP00000002202	Heterogeneous nuclear ribonucleoprotein U like 1.	Heterogeneous nuclear ribonucleoprotein M.	0.944
HNRNPUL1	LOC100706673	ENSONIP00000005045	ENSONIP00000047018	Heterogeneous nuclear ribonucleoprotein U like 1.	Heterogeneous nuclear ribonucleoprotein K, like.	0.931
HNRNPUL1	LOC100708824	ENSONIP00000005045	ENSONIP00000051052	Heterogeneous nuclear ribonucleoprotein U like 1.	RRM domain-containing protein.	0.827
HNRNPUL1	LOC109194311	ENSONIP00000005045	ENSONIP00000023106	Heterogeneous nuclear ribonucleoprotein U like 1.	RRM domain-containing protein.	0.827
HNRNPUL1	hnrnpk	ENSONIP00000005045	ENSONIP00000018888	Heterogeneous nuclear ribonucleoprotein U like 1.	Heterogeneous nuclear ribonucleoprotein K.	0.931
HNRNPUL1	ralyl	ENSONIP00000005045	ENSONIP00000008030	Heterogeneous nuclear ribonucleoprotein U like 1.	RRM domain-containing protein.	0.610
HNRNPUL1	rbmx	ENSONIP00000005045	ENSONIP00000003386	Heterogeneous nuclear ribonucleoprotein U like 1.	RNA binding motif protein X-linked.	0.881
I3J012_ORENI	Cirbp	ENSONIP00000002202	ENSONIP00000012789	Heterogeneous nuclear ribonucleoprotein M.	Cold inducible RNA binding protein b.	0.872
I3J012_ORENI	HNRNPUL1	ENSONIP00000002202	ENSONIP00000005045	Heterogeneous nuclear ribonucleoprotein M.	Heterogeneous nuclear ribonucleoprotein U like 1.	0.944