Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
foxf2Forkhead box F2b. (382 aa)    
Predicted Functional Partners:
nkx3-2
NK3 homeobox 2.
   
 0.605
LOC100702637
Homeobox B6b.
   
 0.565
LOC100697602
Homeobox domain-containing protein.
   
 0.565
nkx2-5
NK2 homeobox 5.
    
 0.558
ipo5
Karyopherin (importin) beta 3.
    
  0.520
hoxb8
Homeobox B8a.
    
 0.513
kpnb1
Karyopherin (importin) beta 1.
    
  0.504
suox
Sulfite oxidase.
     
  0.503
tnpo3
Transportin 3.
     
  0.502
ipo11
Importin 11.
     
  0.502
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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