Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
khdc4KH domain containing 4, pre-mRNA splicing factor. (634 aa)    
Predicted Functional Partners:
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
      
 0.880
puf60
Poly-U binding splicing factor b.
    
 
 0.858
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
  
 0.809
luc7l
LUC7-like (S. cerevisiae).
   
  
 0.787
lmf1
Lipase maturation factor; Involved in the maturation of specific proteins in the endoplasmic reticulum; Belongs to the lipase maturation factor family.
      
 0.761
cherp
Calcium homeostasis endoplasmic reticulum protein.
      
 0.677
LOC100704289
Uncharacterized protein.
      
 0.634
LOC100709778
Far upstream element (FUSE) binding protein 3.
      
 0.634
incenp
Uncharacterized protein.
      
 0.634
Dazap1
DAZ associated protein 1.
      
 0.630
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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