STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
leng1Leukocyte receptor cluster (LRC) member 1. (276 aa)    
Predicted Functional Partners:
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.777
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.771
snw1
SNW domain containing 1.
    
 0.745
xab2
XPA binding protein 2.
   
 0.745
nup155
Nucleoporin 155.
   
 0.744
prpf19
Pre-mRNA processing factor 19.
    
 0.743
lg7hxorf56
Zgc:103697.
    
  0.741
nup107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.737
slu7
SLU7 homolog, splicing factor.
    
 0.737
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.728
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.