STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100707250Uncharacterized protein. (1108 aa)    
Predicted Functional Partners:
sharpin
RanBP2-type domain-containing protein.
    
 0.995
rbck1
RanBP-type and C3HC4-type zinc finger containing 1.
   
 0.989
LOC100708611
Sharpin and rbck1 related.
   
 0.989
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.971
LOC100705328
Baculoviral IAP repeat containing 2.
    
 0.958
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.948
I3JW29_ORENI
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.948
LOC100697176
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.941
otulin
Uncharacterized protein.
    
 0.939
ripk2
Receptor-interacting serine-threonine kinase 2.
    
 0.930
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.