Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
scnm1Sodium channel modifier 1. (254 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.927
rnf113a
Ring finger protein 113A.
   
 
 0.786
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.781
prpf8
Pre-mRNA processing factor 8.
    
 
 0.778
sf3b3
Splicing factor 3b, subunit 3.
    
   0.777
sf3b2
Splicing factor 3b, subunit 2.
    
   0.777
mrpl27
Mitochondrial ribosomal protein L27.
      
 0.762
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.758
LOC100697878
Zgc:158803.
      
 0.756
aar2
AAR2 splicing factor.
      
 0.755
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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