STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scnm1Sodium channel modifier 1. (254 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.847
sf3b3
Splicing factor 3b, subunit 3.
    
   0.833
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.833
rnf113a
Ring finger protein 113A.
   
   0.833
prpf8
Pre-mRNA processing factor 8.
    
   0.829
sf3b2
Splicing factor 3b, subunit 2.
    
   0.829
sf3b6
Splicing factor 3b, subunit 6.
    
   0.827
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.634
Rbm48
RNA binding motif protein 48.
    
 
 0.604
LOC100697878
Zgc:158803.
      
 0.588
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.