Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100705161One cut domain family member. (451 aa)    
Predicted Functional Partners:
lhx1
LIM homeobox 1a.
   
 
 0.496
orc3
Origin recognition complex, subunit 3.
    
   0.495
Atoh7
Atonal bHLH transcription factor 7.
      
 0.495
hnf1b
HNF1 homeobox Ba.
     
 0.491
ENSONIP00000073744
Neurogenin 3.
   
 
 0.484
VSX2
Visual system homeobox 2.
      
 0.474
neurod1
Neurogenic differentiation factor.
   
 
 0.444
WDR7
WD repeat domain 7.
   
  
 0.435
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
      
 0.431
pou4f1
POU domain protein.
   
 
 0.422
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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