STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmss1Cms1 ribosomal small subunit homolog. (291 aa)    
Predicted Functional Partners:
nop53
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
    0.858
Ltv1
LTV1 ribosome biogenesis factor.
   
  
 0.825
bysl
Bystin-like.
   
  
 0.811
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
   
  
 0.762
utp23
UTP23 small subunit processome component.
   
    0.761
LOC100711132
Nucleolar protein interacting with the FHA domain of MKI67.
   
    0.759
LOC100690727
Ribosomal RNA processing 1.
   
    0.753
nol10
Nucleolar protein 10.
   
  
 0.751
esf1
ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).
   
    0.712
rpf2
Ribosome production factor 2 homolog.
   
   0.680
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.