Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100705693Si:ch211-113g11.6; Belongs to the semaphorin family. (640 aa)    
Predicted Functional Partners:
LOC100706295
Immunoglobulin superfamily, member 9Bb.
      
 0.710
igsf9b
Immunoglobulin superfamily member 9B.
      
 0.705
Fam185a
Family with sequence similarity 185 member A.
    
   0.658
I3KBB2_ORENI
Plexin A3.
    
 0.605
PLXND1
Plexin D1.
    
 0.605
PLXNA2
Plexin A2.
    
 0.605
LOC100690065
Plexin C1.
    
 0.605
LOC100710907
Plexin A2.
    
 0.605
plxna1
Plexin A1.
    
 0.605
plxna4
Plexin A4.
    
 0.605
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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