STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scelLIM zinc-binding domain-containing protein. (496 aa)    
Predicted Functional Partners:
LOC100695903
Left-right determination factor.
      
 0.580
LOC100709346
Baculoviral IAP repeat containing 5b.
    
 0.521
nebl
Nebulette.
   
 
 0.514
obi1
RING finger protein 219.
      
 0.508
I3J8T9_ORENI
ATP-binding cassette, sub-family A (ABC1), member 12.
   
  
 0.498
LOC100701186
T-box transcription factor 16.
      
 0.489
LOC100702707
LSM family member 14B.
      
 0.489
LSM14B
Protein LSM14 homolog B.
      
 0.489
LOC102081539
GDNF family receptor alpha 3.
      
 0.487
LOC100696723
Uncharacterized protein.
   
 0.483
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.