Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
map1lc3cMicrotubule-associated protein 1 light chain 3 gamma. (128 aa)    
Predicted Functional Partners:
sqstm1
Sequestosome 1.
   
 0.998
calcoco2
SKICH domain-containing protein.
   
 0.998
atg3
Autophagy-related protein 3.
   
 0.996
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
   
 0.995
atg4b
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
   
 0.994
I3J608_ORENI
NBR1 autophagy cargo receptor b.
   
 0.987
nbr1
NBR1 autophagy cargo receptor a.
   
 0.987
plekhm1
Pleckstrin homology domain containing, family M (with RUN domain) member 1.
    
 0.984
LOC100691403
Tax1 (human T-cell leukemia virus type I) binding protein 1b.
   
 0.977
Atg12
Ubiquitin-like protein ATG12.
   
 0.973
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (20%) [HD]