STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdh22Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins. (805 aa)    
Predicted Functional Partners:
glrx2
Glutaredoxin 2.
      
 0.696
rnf24
Ring finger protein 24.
   
  
 0.682
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.653
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.653
LOC102082890
Uncharacterized protein LOC102082890 isoform X1.
   
 0.653
ankrd29
Ankyrin repeat domain-containing protein 29 isoform X1.
   
 
 0.645
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.636
tmem241
Transmembrane protein 241.
      
 0.619
CDH10
Cadherin 10; Cadherins are calcium-dependent cell adhesion proteins.
  
 
 
0.598
LOC100708854
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
   
 
 
0.595
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.