Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100704141Inhibitor of DNA binding 4. (141 aa)    
Predicted Functional Partners:
LOC100706678
Inhibitor of DNA binding 3.
   
  0.930
id1
Inhibitor of DNA binding 1, HLH protein.
   
 
 0.930
id2
Inhibitor of DNA binding 2a.
     
 0.856
myog
Myogenin.
    
 
 0.787
myf6
Myogenic factor 6.
    
   0.756
cep76
Centrosomal protein 76.
      
 0.718
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
      
 0.718
cep192
Centrosomal protein 192.
    
 0.709
LOC100702382
Tyrosine-protein phosphatase non-receptor type.
      
 0.708
ASCL5
Achaete-scute family bHLH transcription factor 5.
    
 0.611
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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