Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prph2Peripherin 2a (retinal degeneration, slow). (369 aa)    
Predicted Functional Partners:
LOC100710942
Rhodopsin.
   
  
 0.869
LOC100711209
Rhodopsin.
   
  
 0.866
I3J8V1_ORENI
Rhodopsin.
   
  
 0.865
grk7
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
   
 
 0.860
RHO
Rhodopsin.
   
  
 0.858
LOC100691236
Rhodopsin.
   
  
 0.857
LOC100703259
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
  
 0.827
fbxo11
Uncharacterized protein.
      
 0.753
ncoa1
Nuclear receptor coactivator 1.
      
 0.700
LOC100708614
PNPLA domain-containing protein.
      
 0.677
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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