STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vsx1Visual system homeobox 1 homolog, chx10-like. (344 aa)    
Predicted Functional Partners:
Atoh7
Atonal bHLH transcription factor 7.
   
  
 0.644
ptf1a
Pancreas associated transcription factor 1a.
   
  
 0.534
ISL2
ISL LIM homeobox 2b.
   
  
 0.446
LOC100708303
Uncharacterized protein.
      
 0.438
SCGN
Secretagogin, EF-hand calcium binding protein.
      
 0.438
guca1b
Guanylate cyclase activator 1B.
      
 0.437
LOC100712387
Nucleoredoxin like 1.
   
  
 0.414
nxnl1
Nucleoredoxin like 1.
   
  
 0.414
bhlhe22
Basic helix-loop-helix family, member e22.
   
  
 0.410
bhlhe23
Basic helix-loop-helix family, member e23.
   
  
 0.405
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.