Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Vsx1Visual system homeobox 1 homolog, chx10-like. (344 aa)    
Predicted Functional Partners:
Atoh7
Atonal bHLH transcription factor 7.
      
 0.694
ptf1a
Pancreas associated transcription factor 1a.
      
 0.573
bhlhe23
Basic helix-loop-helix family, member e23.
   
  
 0.573
foxn4
Forkhead box N4.
      
 0.572
I3JUP0_ORENI
POU domain protein.
   
  
 0.560
ARR3
Arrestin 3.
   
  
 0.482
I3KEW7_ORENI
Retinaldehyde binding protein 1b.
      
 0.479
LOC100701887
Solute carrier family 35 member G2b.
      
 0.476
LOC100712387
Nucleoredoxin like 1.
   
  
 0.465
nxnl1
Nucleoredoxin like 1.
   
  
 0.465
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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