Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC100696580Opsin 4a (melanopsin). (568 aa)    
Predicted Functional Partners:
LOC100705874
Solute carrier family 35 member A3a.
      
 0.706
LOC100702770
Solute carrier family 35 member A3.
      
 0.706
LOC100708914
Aryl hydrocarbon receptor nuclear translocator.
      
 0.641
Vax2
Ventral anterior homeobox 2.
      
 0.553
tbx3
T-box transcription factor 3a.
     
 0.552
LOC100708260
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
 0.539
PLCB4
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.
     
 0.523
gnb4
Guanine nucleotide binding protein (G protein), beta polypeptide 4b.
    
 0.519
LOC100703896
Guanine nucleotide binding protein (G protein), beta polypeptide 1b.
    
 0.519
LOC100692028
Guanine nucleotide binding protein (G protein), beta polypeptide 2.
    
 0.519
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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