Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yipf3Yip1 domain family, member 3. (350 aa)    
Predicted Functional Partners:
yipf4
Protein YIPF.
   
 
 0.991
LOC100690375
Protein YIPF.
   
  
 0.924
yipf1
Protein YIPF.
   
  
 0.904
yipf6
Protein YIPF.
   
 
 0.886
yipf5
Protein YIPF.
   
 
 0.859
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
      
 0.744
selenos
Selenoprotein S.
   
 
 0.738
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
      
 0.673
tmed2
Transmembrane p24 trafficking protein 2.
   
 
 0.630
yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
   
  
 0.630
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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