Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znf407Zinc finger protein 407. (1491 aa)    
Predicted Functional Partners:
ZADH2
Zinc binding alcohol dehydrogenase domain containing 2.
    
 0.878
Frmd6
FERM domain containing 6.
      
 0.829
TSHZ1
Teashirt zinc finger homeobox 1.
      
 0.783
cep70
Centrosomal protein 70.
    
 
 0.782
LOC100691448
Teashirt zinc finger homeobox 1.
      
 0.764
Tmem50a
Transmembrane protein 50A.
      
 0.731
ZNF516
Zinc finger protein 516.
    
0.713
LOC100703333
ADNP homeobox 2b.
   
  
 0.643
LOC100706786
B30.2/SPRY domain-containing protein.
   
 0.642
I3KSB6_ORENI
Thioredoxin_11 domain-containing protein.
   
 0.642
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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