Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100692904Netrin G2. (532 aa)    
Predicted Functional Partners:
lrrc4
Leucine rich repeat containing 4.2.
   
 0.927
LOC100694050
Leucine rich repeat containing 4.1.
   
 0.927
Lrrc4b
Leucine rich repeat containing 4Ba.
   
 0.714
LOC100702325
Leucine rich repeat containing 4Bb.
   
 0.714
LOC100701892
Leucine rich repeat containing 4C, genome duplicate a.
   
 0.714
LOC100691490
Vasorin a.
   
 0.714
vasn
Vasorin b.
   
 0.714
lxn
Latexin.
      
 0.608
ntng1
Netrin g1a.
     
  0.608
LOC100691642
Vav 3 guanine nucleotide exchange factor b.
     
  0.608
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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