STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100703361Uncharacterized protein. (900 aa)    
Predicted Functional Partners:
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.538
LOC102081483
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.520
ENSONIP00000000682
Intersectin 2a.
   
  0.462
I3KKD0_ORENI
Intersectin 2b.
   
  0.462
ENSONIP00000038349
RING finger protein 223.
    
 0.458
ENSONIP00000054571
annotation not available
 
 
0.449
ENSONIP00000057891
annotation not available
 
 
0.447
Birc6
Baculoviral IAP repeat containing 6.
   
 0.440
traf7
TNF receptor-associated factor 7.
   
 0.439
vtn
Vitronectin a.
   
 0.416
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.