Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dnai2Dynein, axonemal, intermediate chain 2b. (592 aa)    
Predicted Functional Partners:
dnali1
Dynein, axonemal, light intermediate chain 1.
   
 0.995
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
  
0.995
GAS8
Growth arrest specific 8.
  
 
 0.953
rsph9
Radial spoke head 9 homolog.
   
 
 0.952
ccdc39
Uncharacterized protein.
    
 0.942
LOC100707731
Radial spoke head component 4A.
   
 
 0.941
ccdc40
Coiled-coil domain containing 40.
   
 
 0.933
armc4
Armadillo repeat containing 4.
   
 
 0.930
I3KLD1_ORENI
Dynein, axonemal, heavy chain 12.
  
 0.922
drc1
Uncharacterized protein.
   
 0.916
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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