STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpn13Protein tyrosine phosphatase non-receptor type 13. (2416 aa)    
Predicted Functional Partners:
plekha2
Si:ch211-204d2.4.
    
 0.626
apc2
APC regulator of WNT signaling pathway 2.
   
 
 0.603
I3KKU9_ORENI
Rap guanine nucleotide exchange factor (GEF) 6.
    
 
 0.546
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
    
 
 0.546
LOC102083126
Uncharacterized protein.
   
 
 0.534
LOC100707394
PH domain-containing protein.
    
 0.498
I3JUL5_ORENI
GRB2-associated binding protein 1.
    
 0.498
pick1
Protein interacting with prkca 1.
    
 0.490
ap2s1
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.442
stam
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
    
 0.441
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.