Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
cherpCalcium homeostasis endoplasmic reticulum protein. (922 aa)    
Predicted Functional Partners:
rbm17
RNA binding motif protein 17.
   
 0.999
LOC100691810
Zgc:163098.
   
 0.994
u2surp
U2 snRNP-associated SURP domain containing.
   
 0.994
sf3a2
Splicing factor 3a, subunit 2.
   
 0.994
phf5a
PHD finger protein 5A.
   
 0.988
smndc1
Survival motor neuron domain containing 1.
   
  0.965
sf3b4
Splicing factor 3b, subunit 4.
   
 0.965
Snrpa1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.958
sf3a1
Splicing factor 3a, subunit 1.
   
 0.955
snrpe
Small nuclear ribonucleoprotein E.
   
 0.950
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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