STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100707731Radial spoke head component 4A. (480 aa)    
Predicted Functional Partners:
rsph9
Radial spoke head 9 homolog.
  
 
 0.962
rsph3
Radial spoke head 3.
  
 
 0.886
LOC100692890
RAN binding protein 2.
   
 
 0.885
NUP214
Nucleoporin 214.
    
 0.876
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
  
  
 0.853
I3J1Z6_ORENI
Dynein regulatory complex subunit 3.
   
  
 0.807
LOC100690350
Coiled-coil domain containing 114.
   
  
 0.797
CCNO
Cyclin O; Belongs to the cyclin family.
    
 0.723
ak7
Uncharacterized protein.
  
  
 0.698
dnai2
Dynein, axonemal, intermediate chain 2b.
   
  
 0.688
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.