Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
I3JLK3_ORENIZgc:154093. (276 aa)    
Predicted Functional Partners:
LOC100708158
Uncharacterized protein LOC100708158.
  
     0.471
cdc42ep4
CDC42 effector protein (Rho GTPase binding) 4b.
     
 0.453
LOC100697350
CDC42 effector protein (Rho GTPase binding) 4a.
     
 0.453
cdc42ep5
CRIB domain-containing protein.
     
 0.453
LOC102078793
Cdc42 effector protein 1.
     
 0.453
Cdc42se1
CDC42 small effector protein 1.
      
 0.410
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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