Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtcaRNA 3'-terminal phosphate cyclase. (366 aa)    
Predicted Functional Partners:
bms1
BMS1 ribosome biogenesis factor.
   
 0.964
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.951
LOC100706520
PWP2 small subunit processome component.
   
 
 0.943
wdr43
WD repeat domain 43.
   
 0.937
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
   
 
 0.936
utp4
UTP4 small subunit processome component.
   
 0.934
nol6
Nucleolar protein 6.
   
 0.933
wdr75
WD repeat domain 75.
   
 0.929
wdr3
WD repeat domain 3.
   
 
 0.927
utp6
UTP6 small subunit processome component.
   
 
 0.926
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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