STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcaRNA 3'-terminal phosphate cyclase. (366 aa)    
Predicted Functional Partners:
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.982
bms1
BMS1 ribosome biogenesis factor.
   
 0.976
utp4
UTP4 small subunit processome component.
   
 0.975
LOC100706520
PWP2 small subunit processome component.
   
 
 0.972
utp15
UTP15 small subunit processome component.
   
 0.971
wdr75
WD repeat domain 75.
   
 0.971
nol6
Nucleolar protein 6.
   
 0.971
wdr43
WD repeat domain 43.
   
 0.971
Fcf1
FCF1 rRNA-processing protein.
   
 0.965
utp6
UTP6 small subunit processome component.
   
 
 0.965
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.