STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102079445PHD-type domain-containing protein. (1421 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.894
BPTF
Bromodomain PHD finger transcription factor.
   
 
 0.681
LOC100690815
Nucleosome-remodeling factor subunit BPTF isoform X2.
   
 
 0.681
LOC100690413
Uncharacterized protein.
   
  0.518
atrx
ATRX chromatin remodeler.
   
  0.518
cenpi
Centromere protein I.
    
 0.491
cenpn
Centromere protein N.
    
 0.484
I3JV04_ORENI
Translocase of outer mitochondrial membrane 20.
   
    0.483
arid4a
AT rich interactive domain 4A (RBP1-like).
   
    0.483
LOC100699860
Nipped-B protein.
   
   0.481
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.