I3JM57_ORENI protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

I3JM57_ORENI

Uncharacterized protein. (143 aa)

Predicted Functional Partners:

I3K5L5_ORENI

0.493

LOC100703165

0.487

dcxr

0.482

ENSONIP00000071945

0.440

LOC100712058

0.429

LOC100703845

0.429

txnrd2

0.413

selenok

0.411

selenos

0.410

LOC100711584

0.409

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSONIP00000071945	I3JM57_ORENI	ENSONIP00000071945	ENSONIP00000009951	Selenoprotein T, 1a.	Uncharacterized protein.	0.440
ENSONIP00000071945	LOC100703165	ENSONIP00000071945	ENSONIP00000055562	Selenoprotein T, 1a.	Peroxiredoxin like 2C.	0.493
ENSONIP00000071945	selenok	ENSONIP00000071945	ENSONIP00000066413	Selenoprotein T, 1a.	Selenoprotein K.	0.918
ENSONIP00000071945	selenos	ENSONIP00000071945	ENSONIP00000014346	Selenoprotein T, 1a.	Selenoprotein S.	0.917
ENSONIP00000071945	txnrd2	ENSONIP00000071945	ENSONIP00000019914	Selenoprotein T, 1a.	Thioredoxin reductase 2, tandem duplicate 1.	0.769
I3JM57_ORENI	ENSONIP00000071945	ENSONIP00000009951	ENSONIP00000071945	Uncharacterized protein.	Selenoprotein T, 1a.	0.440
I3JM57_ORENI	I3K5L5_ORENI	ENSONIP00000009951	ENSONIP00000047894	Uncharacterized protein.	Myozenin 3a.	0.493
I3JM57_ORENI	LOC100703165	ENSONIP00000009951	ENSONIP00000055562	Uncharacterized protein.	Peroxiredoxin like 2C.	0.487
I3JM57_ORENI	LOC100703845	ENSONIP00000009951	ENSONIP00000066638	Uncharacterized protein.	Si:rp71-17i16.4.	0.429
I3JM57_ORENI	LOC100711584	ENSONIP00000009951	ENSONIP00000009596	Uncharacterized protein.	Myozenin 2a.	0.409
I3JM57_ORENI	LOC100712058	ENSONIP00000009951	ENSONIP00000000123	Uncharacterized protein.	Selenoprotein T; Belongs to the SelWTH family. Selenoprotein T subfamily.	0.429
I3JM57_ORENI	dcxr	ENSONIP00000009951	ENSONIP00000054539	Uncharacterized protein.	L-xylulose reductase.	0.482
I3JM57_ORENI	selenok	ENSONIP00000009951	ENSONIP00000066413	Uncharacterized protein.	Selenoprotein K.	0.411
I3JM57_ORENI	selenos	ENSONIP00000009951	ENSONIP00000014346	Uncharacterized protein.	Selenoprotein S.	0.410
I3JM57_ORENI	txnrd2	ENSONIP00000009951	ENSONIP00000019914	Uncharacterized protein.	Thioredoxin reductase 2, tandem duplicate 1.	0.413
I3K5L5_ORENI	I3JM57_ORENI	ENSONIP00000047894	ENSONIP00000009951	Myozenin 3a.	Uncharacterized protein.	0.493
I3K5L5_ORENI	LOC100703845	ENSONIP00000047894	ENSONIP00000066638	Myozenin 3a.	Si:rp71-17i16.4.	0.659
I3K5L5_ORENI	LOC100711584	ENSONIP00000047894	ENSONIP00000009596	Myozenin 3a.	Myozenin 2a.	0.839
LOC100703165	ENSONIP00000071945	ENSONIP00000055562	ENSONIP00000071945	Peroxiredoxin like 2C.	Selenoprotein T, 1a.	0.493
LOC100703165	I3JM57_ORENI	ENSONIP00000055562	ENSONIP00000009951	Peroxiredoxin like 2C.	Uncharacterized protein.	0.487