STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
riox2Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase. (470 aa)    
Predicted Functional Partners:
mrpl2
Mitochondrial ribosomal protein L2.
    
 
 0.691
tyw5
tRNA-yW synthesizing protein 5.
      
 0.584
jmjd8
Jumonji domain containing 8.
      
 0.580
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.578
Helz2
Uncharacterized protein.
      
 0.501
hspbap1
Hspb associated protein 1.
      
 0.499
kdm8
Lysine (K)-specific demethylase 8.
      
 0.474
hif1an
Hypoxia inducible factor 1 alpha subunit inhibitor.
      
 0.467
jmjd6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
      
 0.426
ENSONIP00000079022
60S ribosomal protein L27a-like isoform X3.
    
 
 0.414
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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