STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100694800Sarcoglycan, alpha. (397 aa)    
Predicted Functional Partners:
sspn
Sarcospan (Kras oncogene-associated gene).
   
 
 0.820
sgcz
Sarcoglycan zeta.
   
 0.796
sgcg
Sarcoglycan, gamma.
   
 0.746
sgcb
Sarcoglycan, beta (dystrophin-associated glycoprotein).
    
 0.670
nmb
Uncharacterized protein.
     
 0.647
kti12
KTI12 chromatin associated homolog.
     
 0.647
ENSONIP00000029294
annotation not available
     
 0.647
I3J7C3_ORENI
Dystrophin.
    
 
 0.620
LOC100699984
Peptidase S72 domain-containing protein.
    
 0.611
dag1
Dystroglycan 1.
    
 0.611
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.