STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsnare1Si:ch211-208k15.1; Belongs to the syntaxin family. (285 aa)    
Predicted Functional Partners:
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
   
 0.786
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
   
 0.687
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.687
Vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.687
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
    
 0.680
bet1
Blocked early in transport 1.
   
 0.678
bet1l
Bet1 golgi vesicular membrane trafficking protein like.
   
 0.678
LOC100697603
N-ethylmaleimide-sensitive factor a.
   
 0.673
LOC100706831
N-ethylmaleimide-sensitive factor b.
   
 0.673
napa
N-ethylmaleimide-sensitive factor attachment protein, alpha b.
    
 0.645
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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